Error using gometh from missMethyl
0
0
Entering edit mode
11 months ago

I am trying to use the gometh function from missMethyl (which I have used several times before). The command I am running is:

go<-gometh(sigcpgm,allcpg,collection="GO",array.type="EPIC")


However I get the following error:

Error in BiasedUrn::pWNCHypergeo(results[i, "DE"], results[i, "N"], Nuniverse -  :
Invalid value for odds


I understand this could be related to the sig cgs mapping to the same GO term, but I'm wondering how to proceed with the analysis/ overcome the error if possible.

methylation missmethyl gometh • 410 views
0
Entering edit mode

Hi, I am using the same package with EPIC Methylation data. I get the same error, were you able to solve it?