Error using gometh from missMethyl
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11 months ago

I am trying to use the gometh function from missMethyl (which I have used several times before). The command I am running is:

go<-gometh(sigcpgm,allcpg,collection="GO",array.type="EPIC")

However I get the following error:

Error in BiasedUrn::pWNCHypergeo(results[i, "DE"], results[i, "N"], Nuniverse -  : 
  Invalid value for odds

I understand this could be related to the sig cgs mapping to the same GO term, but I'm wondering how to proceed with the analysis/ overcome the error if possible.

methylation missmethyl gometh • 410 views
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Hi, I am using the same package with EPIC Methylation data. I get the same error, were you able to solve it?

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