Entering edit mode
3.5 years ago
venura
▴
70
Hi ,
When I run prepDE.py job exit with the following error. I am using StringTie/2.1.4 with Python/2.7.18.
Traceback (most recent call last): File "/sw/eb/software/StringTie/2.1.4-GCC-9.3.0/bin/prepDE.py", line 58, in samples = [(i,glob.iglob(os.path.join(opts.input,i,"*.gtf")).next()) for i in next(os.walk(opts.input))[1] if re.search(opts.pattern,i)] StopIteration
I have a directory structure as follows (since formatting looks messed up I added image as well)
├── ballgown
│ ├── PVX_2d_1
│ │ ├── e2t.ctab
│ │ ├── e_data.ctab
│ │ ├── i2t.ctab
│ │ ├── i_data.ctab
│ │ ├── PVX_2d_1.gtf
│ │ └── t_data.ctab
│ ├── PVX_2d_2
│ │ ├── e2t.ctab
│ │ ├── e_data.ctab
│ │ ├── i2t.ctab
│ │ ├── i_data.ctab
│ │ ├── PVX_2d_2.gtf
│ │ └── t_data.ctab
│ ├── PVX_2d_3
│ │ ├── e2t.ctab
│ │ ├── e_data.ctab
│ │ ├── i2t.ctab
│ │ ├── i_data.ctab
│ │ ├── PVX_2d_3.gtf
│ │ └── t_data.ctab
Can someone help me in this regard? Thanks in advance.
