Picrust2: High level of description
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22 months ago
Claire • 0

Hello all,

I did picrust2 tutorial and i had description for each KO and EC. My question is how can i get high level of description L2 or L3 of the KEGG hierarchy ? How can i swith from picrust2 result to use this function "categorize_by_function.py" ?

Best,

picrust picrust2 • 1.8k views
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Were you able to figure out this part? I am also confused in this, where can I find this information.

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if you have reached to a solution or a work around please let us know

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Yes, some how . still you have the problem ?

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16 months ago
1731147b • 0

Hi! I have the same problem. There is any example? Thanks

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8 months ago
Giovy • 0

Hi, did you solve this?

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6 months ago

I can see that this command has been removed from the scripts in PICRUST2 (can't find it in the scripts folder in the GitHub project page) as for other scripts BUT they are in PICRUST1 I am waiting to find a solution if anyone got, or to correct me if I am wrong, otherwise, I will be waiting for the Github team to respond.

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12 weeks ago
Ghildan • 0

Try to refer to the discussion in the link below. https://github.com/gavinmdouglas/picrust2_manuscript/issues/1

The author provides R script to categorize to L3

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