Question: vg gam file statistics: how many reads are mapped
0
gravatar for xwwang
4 weeks ago by
xwwang10
Gerogia , USA
xwwang10 wrote:

Is there any existing tool which can calculate how many reads are mapped in .gam file which is generated by command: vg map

for example the .gam file is "graph.read.gam"

vg • 112 views
ADD COMMENTlink modified 19 days ago by Jouni Sirén110 • written 4 weeks ago by xwwang10
1
gravatar for Jouni Sirén
19 days ago by
Jouni Sirén110
UCSC Genomics Institute
Jouni Sirén110 wrote:

You can get some basic statistics about the GAM file with vg stats -a alignments.gam [graph-name]. The graph file is optional, but if you include it, vg stats will compute some extra statistics.

ADD COMMENTlink written 19 days ago by Jouni Sirén110
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1288 users visited in the last hour