freebayes running error on public data
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Entering edit mode
13 months ago

Hi, I have 7 files downloaded from sra-download link (it tells those are bam files only), so started running freebayes for these files. I am getting the following error for all 7 samples, Please help me out to solve the error. These are public data.

[W::sam_read1] Parse error at line 1

terminate called after throwing an instance of 'std::runtime_error'

what(): sam_read1 return status: -2 file: SRR6768017.1

Aborted (core dumped)

alignment variant calling freebayes bam file • 273 views
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