freebayes running error on public data
0
0
Entering edit mode
3.5 years ago

Hi,

I have 7 files downloaded from sra-download link (it tells those are bam files only), so started running freebayes for these files. I am getting the following error for all 7 samples, Please help me out to solve the error. These are public data.

[W::sam_read1] Parse error at line 1
terminate called after throwing an instance of 'std::runtime_error'
what():  sam_read1 return status: -2 file: SRR6768017.1
Aborted (core dumped)
alignment freebayes variant-calling bam • 577 views
ADD COMMENT

Login before adding your answer.

Traffic: 2581 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6