Setting haploid missing to diploid missing in VCF
0
1
Entering edit mode
21 months ago
ma17 ▴ 20

Hi,

bcftools +setGT plugin allows to filter genotypes based on specific criteria.

for e.g.

bcftools +setGT in.vcf -- -t ./x -n .

sets partially missing variants to missing ./.

I have some haploid missing genotypes . that I want to set as diploid missing ./., however the command above does not do this, is there a quick way to do this?

Thanks

VCF bcftools • 588 views
ADD COMMENT

Login before adding your answer.

Traffic: 1003 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6