Setting haploid missing to diploid missing in VCF
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3.5 years ago
ma17 ▴ 20

Hi,

bcftools +setGT plugin allows to filter genotypes based on specific criteria.

for e.g.

bcftools +setGT in.vcf -- -t ./x -n .

sets partially missing variants to missing ./.

I have some haploid missing genotypes . that I want to set as diploid missing ./., however the command above does not do this, is there a quick way to do this?

Thanks

VCF bcftools • 890 views
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