Entering edit mode
3.5 years ago
ma17
▴
20
Hi,
bcftools +setGT
plugin allows to filter genotypes based on specific criteria.
for e.g.
bcftools +setGT in.vcf -- -t ./x -n .
sets partially missing variants to missing ./.
I have some haploid missing genotypes .
that I want to set as diploid missing ./.
, however the command above does not do this, is there a quick way to do this?
Thanks