what is the deal with bioconda?
1
0
Entering edit mode
7 months ago
mk ▴ 210

Is there any kind of conflict-checking for this channel?

I've never had a problem installing conda packages until I tried:

conda create --name seur01 -y 

conda activate seur01 

conda install -c bioconda r-seurat

Collecting package metadata (current_repodata.json): done 
Solving environment: failed with initial frozen solve. 
Retrying with flexible solve. 
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. 
Collecting package metadata (repodata.json): done 
Solving environment: failed with initial frozen solve. 
Retrying with flexible solve. 
Solving environment: /  Found conflicts! 
Looking for incompatible packages.                                                              
failed                                                                

UnsatisfiableError:

And that's it! There is no more output.

conda bioconda • 1.3k views
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6
Entering edit mode
7 months ago
GenoMax 102k

Make sure the order of channels is as follows.

conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge

I don't see the problem you are getting.

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1
Entering edit mode

confirmed, thanks @genomax

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1
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It's December 6, 2020, and this comment solved the problem related to bioconda package installation I have been tackling for >48 hours. Thank you so much @GenoMax!

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thanks. it works great and solved the problem!

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