I am very new in using Monocle 3. I need to know the state of each cell after ordering the cells. I meant - which branch does a cell belong to? After going through Monocle 2, my understanding is the OrderCells() can update the cell_data_set with State and Pseudotime. But in Monocle 3 I could not find anything like this. However, in Monocle 3 there is a separate function to extract pseudotime but not the state.
Could anyone explain what could be a solution?
Thanks in Advance.