How I do get the state Id/ Branch ID for each cell in Monocle 3?
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7 months ago

Hi All,

I am very new in using Monocle 3. I need to know the state of each cell after ordering the cells. I meant - which branch does a cell belong to? After going through Monocle 2, my understanding is the OrderCells() can update the cell_data_set with State and Pseudotime. But in Monocle 3 I could not find anything like this. However, in Monocle 3 there is a separate function to extract pseudotime but not the state.

Could anyone explain what could be a solution?

Thanks in Advance.

RNA-Seq R monocle • 217 views
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