Entering edit mode
3.9 years ago
MAPK
★
2.1k
I am trying to execute this command to replace read groups on a bam file using picard (2.20.8). However, I've been getting this error below. Can someone please help me figure out the problem here?
Error:
Invalid argument 'HS2000-1015_160'.
Command exited with non-zero status 1
command executed :
/usr/local/openjdk-8/bin/java -Xms2g -Xmx100g -XX:+UseSerialGC -Dpicard.useLegacyParser=false -jar /usr/bin/picard.jar AddOrReplaceReadGroups -I /ADNI_1380^LP6005117-DNA_G04^ADNI_WGS/LP6005117-DNA_G04.bam -O ADNI_WGS/ADNI_1380^LP6005117-DNA_G04^ADNI_WGS/ADNI_1380^LP6005117-DNA_G04^ADNI_WGS.bam -ID HS2000-1015_160 -LB LP6005117-DNA_G04 -PL -PU HS2000-1015_160 -SM ADNI_1380