Visualizing alternative splicing events

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3.5 years ago

Nelislam4 ▴ 20

Dears,

I have TPM read counts of RNA-seq data from Salmon, then I have used SUPPA2 for alternative splicing events detection. The point is, I need a tool to visualize the alternative splicing events across conditions? and what files should I consider for these visualization, TPM read counts or psi files from SUPPA2?

I really appreciate your help,

Nour

RNA-Seq • 1.1k views

ADD COMMENT • link 3.5 years ago by Nelislam4 ▴ 20

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I would show the PSI values in boxplots per group as well as read coverages for individual events similar to the one depicted in this figure: Fig4.f

ADD REPLY • link 3.5 years ago by husensofteng ▴ 410

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Thanks for your response, actually the link requires login domain as certificate.

Did you means avg PSI values which is in .clustvec file?

Thanks, Nour

ADD REPLY • link 3.5 years ago by Nelislam4 ▴ 20

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sorry that was through a proxy, the link should work now.

ADD REPLY • link 3.5 years ago by husensofteng ▴ 410

Login before adding your answer.