Greetings Biostars,
I'm attempting to creating a sliding window dn/ds for research on the pten gene. To do this, I have collected my .Phy, ,Nwk treem and SWAMP (running on Python 2.5).
Whenever I attempt to run SWAMP thought, it comes across the following error:
ValueError: The following line in C:\Users\conti\PycharmProjects\SWAMP_Master\pten\tree.nwf is not formatted correctly, Check the documentation:
((((Dgri:3551.8500000000004,Dbus:4161.15):2999.8125000000005,(Dobs:1586.0,Dmir:1681.0):1756.6874999999995):1341.94921875,((Dana:1057.78125,Dbip:1084.21875):1220.66015625,(Dele:1512.5156249999998,(Dsuz:1074.0234375(Dyak:1023.0000000000005(Dsim:694.2857142857142,Dmel:646.7142857142858):601.4999999999995):572.9765625):155.85937500000023):479.49609375):102.90234375):1487.900390625,Dkik:1487.900390625);
I've attempted to look through the README file for SWAMP along with following along with what my TL had provided to me, but for whatever reason, my code isn't working what so ever. Would anyone have any ideas on what is wrong with my Tree file that would cause this kind of error?
My responses may be slow as I also work FT - I will be checking this thread periodically and answer any questions I can.
Cheers, Continuum