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• How to output VarsScan variant calling results in a .tab or txt/csv file?
  How to output VarsScan variant calling results in a .tab or txt/csv file? I run code line samto...
• Storing a matrix.mtx in a gene expression matrix csv/ txt format
  Hi, I have a single-cell RNAseq data in matrix.mtx downloaded format from 10Xgenomics, I want to...
• Convert txt or ascii files of H NMR to jcamp or other format for processing
  i got txt file of h nmr with only y column and the i converted into x,y columns. now i cant ope...
• how can I convert txt file format to CEL file format for TCGAbiolinks
  i am working on TCGA database and want to prepare clinical data for analysis and normalization.i ...
• How to convert the data from .wig file to .table or .csv?
  Hi, all I read a data from wig file with import.wig function of rtracklayer package. The class() ...
• Mantel Test of genome size difference and genetic distance in R
  I am trying to conduct a Mantel test in R for 32 species on differences in genome size between ea...
• Annotated txt and csv files show empty columns in SIFT,Polyphen2, Mutation tester and other columns
  I tried annotating my vcf file in ANNOVAR using the below mentioned command but I am unable to ge...
• How to convert txt or csv files into ped files?
  I have the information `"FID, IID, PID, MID, Sex, Pheno, Genotype1 allele A ...."` with *csv* fil...
• How to convert a meta-analysis file from PLINK (.meta) to a .csv or.txt to be read into R?
  Hi, I'm encountering issues with reading .meta files into R. I am assuming the file needs to be ...
• File conversion in bash, discrepancy in number of lines after conversion.
  csv file in excel and saved it as .txt and when I count the lines using `wc -l` there is one line...
• Convert ped/bed into CSV/text file
  Hello everyone! I have preprocessed SNP data file after using PLINK in BED format. I need to carr...
• What's the meaning of the numbers in each column in the .txt file generated by snpEFF
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• How to convert .msp file of NIST peptide spectral library to mzxml file?
  I have downloaded NIST peptide spectral library from NIST database(*http://chemdata.nist.gov/doku...
• FCS to TXT
  Is there a way to convert FCS to TXT or CSV in R? I found Gene Pattern and some older tools tha...
• recode SNPs ATGC illumina
  hello, , i have a snp typing file whose genotypes are in ATGC format that i want to convert to 0,...
• how to convert UniqueReadCounts.txt to FPKM
  I have a GSE84346_UniqueReadCounts from NCBI_GEO, need to this data into FPKM using any tool and ...
• Merging specific columns from different txt files in a unit file
  Hi, I counted reads in each bam file by featureCounts, now I have many count.txt files. how I ca...
• WAG matrix implementation
  I am working with certain programs in python. I want to use WAG matrix for phylogeny inference, b...
• load csv/txt... format dataset to minfi package class object
  Dear All, Recently, I am analyzing dna methylation data using the minfi package. I have seen min...