RSEM expected_count vs normalized_count
1
0
Entering edit mode
4.1 years ago
Pappu ★ 2.1k

I am wondering what is the difference between RSEM expected_count vs normalized_count and which one should be used for DESeq2 or EdgeR.

RNA-Seq • 2.7k views
ADD COMMENT
0
Entering edit mode
3.9 years ago

Have a look at these posts Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
Question about how to transform RSEM expected_count of TCGA TARGET GTEX to integers?.
You should use expected_count as the input, provided it has not been transformed.

ADD COMMENT

Login before adding your answer.

Traffic: 2211 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6