Entering edit mode
3.4 years ago
naodaigua_weng
•
0
I am new to the ATAC and I am not sure how to analyze it. how to calculate ATAC-Seq cut sites for each peak from ATAC data??
I use
featureCounts
using the--read2pos 5
option to only count the 5' end of each read (so of both R1 and R2 since each 5' end is a cutting site). That assumes you are asking how to make a count matrix, but your question is actually unclear. Please be more precise what you actually want to do.