Entering edit mode
3.5 years ago
Bioinfonext
▴
460
Hello
Could you please suggest how I can get dotplot figure like attached from deseq2 result file; My deseq2 result file looks like this;
I wanted to show Genus names on Y-axis and log2Foldchange on the X-axis and I am also wanted to show dot colour based on phylum name.
log2FoldChange padj Kingdom Phylum Genus
OTU1 0.214360038 0.369800256 Bacteria Proteobacteria Burkholderiaceae
OTU2 0.104133836 0.611791812 Bacteria Proteobacteria Xanthobacteraceae
OTU3 0.911214638 8.33E-08 Bacteria Proteobacteria Archangiaceae
OTU4 1.162701206 4.80E-08 Bacteria Proteobacteria Geobacteraceae
OTU5 -2.439651618 1.62E-08 Bacteria Actinobacteria Microbacteriaceae