Visualize pileup data
2
0
Entering edit mode
2.2 years ago
bsmith030465 ▴ 210

Hi,

I have a pileup file that contains the read information for overlaps on GFP data. Is there an online tool where I can upload the pileup file and the reference .fa file to visualize the data?

Or is there a program that I can download to visualize this data?

thanks!

pileup gfp • 1.6k views
ADD COMMENT
1
Entering edit mode

Not sure what GFP data is and what type of visualization you're after, but have you tried IGV for a start?

ADD REPLY
4
Entering edit mode
14 months ago
Sehi L'Yi ▴ 60

Potentially helpful resources:

ADD COMMENT
1
Entering edit mode
14 months ago
atorreso ▴ 130

The list provided by Sehi L'Yi is probably the way to go, but I will also add the R package Gviz which it's also useful for figures.

ADD COMMENT

Login before adding your answer.

Traffic: 1405 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6