Can anyone help in this issue
Can anyone please suggest how can I perform the differential abundance Wilcoxon rank test from the Phyloseq object (following tutorial: https://vaulot.github.io/tutorials/Phyloseq_tutorial.html). and from them, plotting "median relative abundance of genera (ﬁlled circles) and the interquartile range of the distribution (whiskers)" as an attached figure. and if possible convert the phyloseq object to indicspecies (https://cran.r-project.org/web/packages/indicspecies/index.html) to plot 2nd figure. Thank you
That second plot is just a "regular" plot (and can be constructed, for example, as demonstrated in this post: https://www.biostars.org/p/463626/#464740).
Thank you Dunois. Could you kindly share a demo of my desired figure (2)? I found little bit difference from your previous post. Thank you
Please don't delete a question after someone spends the time to help you.
Apology! Make sure to follow in future.