How could I get single copy core orthologous gene from the ProteinOrtho output file?
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11 months ago
pendy0518 • 0

Hi everyone.

Regarding to the question, I have fetched the protein sequences of orthologous groups from the ProteinOrtho output table (.tsv) using proteinortho_grab_proteins.pl and now I have plenty of orthologGroup files. How could I filter the protein sequences in orthologous group so that each of the orthologous groups contains one-to-one orthologs between species?

Is there any script that can be referred on doing so? Or any recommended tools?

Thank you in advance.

single core ortholog ProteinOrtho phylogenomics • 418 views
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