Phylogenetic tree where phylum in inner circle and genera/species outer circle?

Question

[MSRS]

Hi, The phylogenetic tree where phylum in the inner circle and genus in the outer circle, any site or programs or packages available? Just for demo https://ibb.co/59rVSd1

I have the data frame like this

Phyla genus
Actinobacteria  Collinsella
Actinobacteria  Coriobacterium
Actinobacteria  Corynebacterium_1
Actinobacteria  Dermacoccus
Bacteroidetes   [Prevotella]
Bacteroidetes   Alistipes
Bacteroidetes   Bacteroides
Chrysiogenetes  Desulfurispirillum
Cyanobacteria   Raphidiopsis
Deferribacteres Deferribacter
Firmicutes  [Ruminococcus]
Firmicutes  Acetivibrio
Firmicutes  Acidaminococcus
Fusobacteria    Fusobacterium
Proteobacteria  Sutterella
Proteobacteria  Xanthomonas
Proteobacteria  Xenorhabdus
Proteobacteria  Yersinia
Spirochaetes    Brachyspira
Spirochaetes    Spirochaete
Synergistetes   Dethiosulfovibrio
Verrucomicrobia Akkermansia

Thanks in advance. SR

[antonioggsousa]

Hi,

That figure is not a phylogenetic tree. It seems to me a Sankey or arc diagram assembled in a circular way (https://www.data-to-viz.com/graph/sankey.html).

If you have a phylogenetic tree you can use iTOL where you can color each genera affiliated with a particular phylum in a different color, like this example - they colored by domain, but it works in the same way to phylum.

I hope this helps,

António

[MSRS]

Thank you very much for your reply. Needs more work on arc diagram.

Answer 1

[Imon]

Sankey diagram is a very useful visualization to show the flow of data. Many people create using R or other tools which require you to do some or extensive coding. But PPCExpo provides you a better and easiest way to create the Sankey Diagram in no time without coding only on few clicks.