Phylogenetic tree where phylum in inner circle and genera/species outer circle?
1
0
Entering edit mode
7 months ago
MSRS ▴ 160

Hi, The phylogenetic tree where phylum in the inner circle and genus in the outer circle, any site or programs or packages available? Just for demo https://ibb.co/59rVSd1

I have the data frame like this

Phyla genus
Actinobacteria  Collinsella
Actinobacteria  Coriobacterium
Actinobacteria  Corynebacterium_1
Actinobacteria  Dermacoccus
Bacteroidetes   [Prevotella]
Bacteroidetes   Alistipes
Bacteroidetes   Bacteroides
Chrysiogenetes  Desulfurispirillum
Cyanobacteria   Raphidiopsis
Deferribacteres Deferribacter
Firmicutes  [Ruminococcus]
Firmicutes  Acetivibrio
Firmicutes  Acidaminococcus
Fusobacteria    Fusobacterium
Proteobacteria  Sutterella
Proteobacteria  Xanthomonas
Proteobacteria  Xenorhabdus
Proteobacteria  Yersinia
Spirochaetes    Brachyspira
Spirochaetes    Spirochaete
Synergistetes   Dethiosulfovibrio
Verrucomicrobia Akkermansia

Thanks in advance. SR

tree phylogeny • 354 views
ADD COMMENT
1
Entering edit mode

Hi,

That figure is not a phylogenetic tree. It seems to me a Sankey or arc diagram assembled in a circular way (https://www.data-to-viz.com/graph/sankey.html).

If you have a phylogenetic tree you can use iTOL where you can color each genera affiliated with a particular phylum in a different color, like this example - they colored by domain, but it works in the same way to phylum.

I hope this helps,

António

ADD REPLY
0
Entering edit mode

Thank you very much for your reply. Needs more work on arc diagram.

ADD REPLY
0
Entering edit mode
8 days ago
Imon • 0

Sankey diagram is a very useful visualization to show the flow of data. Many people create using R or other tools which require you to do some or extensive coding. But PPCExpo provides you a better and easiest way to create the Sankey Diagram in no time without coding only on few clicks.

ADD COMMENT

Login before adding your answer.

Traffic: 1190 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6