Question: Phylogenetic tree where phylum in inner circle and genera/species outer circle?
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Shaminur • 100 wrote:
Hi, The phylogenetic tree where phylum in the inner circle and genus in the outer circle, any site or programs or packages available? Just for demo https://ibb.co/59rVSd1
I have the data frame like this
Phyla genus
Actinobacteria Collinsella
Actinobacteria Coriobacterium
Actinobacteria Corynebacterium_1
Actinobacteria Dermacoccus
Bacteroidetes [Prevotella]
Bacteroidetes Alistipes
Bacteroidetes Bacteroides
Chrysiogenetes Desulfurispirillum
Cyanobacteria Raphidiopsis
Deferribacteres Deferribacter
Firmicutes [Ruminococcus]
Firmicutes Acetivibrio
Firmicutes Acidaminococcus
Fusobacteria Fusobacterium
Proteobacteria Sutterella
Proteobacteria Xanthomonas
Proteobacteria Xenorhabdus
Proteobacteria Yersinia
Spirochaetes Brachyspira
Spirochaetes Spirochaete
Synergistetes Dethiosulfovibrio
Verrucomicrobia Akkermansia
Thanks in advance. SR
Hi,
That figure is not a phylogenetic tree. It seems to me a Sankey or arc diagram assembled in a circular way (https://www.data-to-viz.com/graph/sankey.html).
If you have a phylogenetic tree you can use iTOL where you can color each genera affiliated with a particular phylum in a different color, like this example - they colored by domain, but it works in the same way to phylum.
I hope this helps,
António
Thank you very much for your reply. Needs more work on arc diagram.