Question: R or python packages for differential methylation levels analysis: case x control
gravatar for carlos_marchi
16 days ago by
Brazil, São Paulo
carlos_marchi60 wrote:


There are several txt files in which each corresponds to a patient containing measure methylation levels in both conditionals: case and control. Filename corresponds to patient identification and inside the file contains three columns: gene symbol, case and control. The DNA methylation levels can be B-values or M-values. The HumanMethylation450 used to quantify methylation levels.

So, Is there a R or Python package can read these data and applies the differential methylation levels analysis? Does package show information invoving logFC, P-value, gene is hypermethylated, hypomethylated or none?

Thank you very much!

ADD COMMENTlink written 16 days ago by carlos_marchi60

You may want to check these posts:

1- Methylation Analysis Tutorial in R_part1

2-Methylation Analysis Tutorial in R_part2

ADD REPLYlink written 16 days ago by Hamid Ghaedi780
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