Question: Pysam not giving samtools CLI
0
gravatar for cf556
15 days ago by
cf55610
cf55610 wrote:

I am trying to run velocyto but I am having some issues with samtools. Namely, I have installed pysam, but I am getting the following error when I try to run velocyto:

FileNotFoundError: [Errno 2] No such file or directory: 'samtools': 'samtools'

Is there something more I have to do to get samtools into the PATH?

rna-seq conda python • 97 views
ADD COMMENTlink written 15 days ago by cf55610
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