Question: Alternative for phylosim in R
0
gravatar for Elephantdumbo
14 days ago by
Elephantdumbo20 wrote:

Hey everyone, I want to simulate nucleotide substitution in R and I found this package but it is no longer on CRAN and it is discontinued.

This phyloslim ;package https://www.ebi.ac.uk/goldman-srv/phylosim/

Thank you

sequence R • 100 views
ADD COMMENTlink modified 6 days ago by maxime.policarpo130 • written 14 days ago by Elephantdumbo20
1

This is because it depends on another package removed from CRAN. You could asked the authors to replace the dependency (there may be an alternative package).

EDIT: Looking at the GitHub repo shows that the dependency has already been removed. Not sure then why CRAN is reporting this dependency. I still suggest you contact the authors about this.

ADD REPLYlink modified 14 days ago • written 14 days ago by Jean-Karim Heriche24k
2
gravatar for maxime.policarpo
6 days ago by
France, Paris
maxime.policarpo130 wrote:

Try this :

install_url('http://cran.r-project.org/src/contrib/Archive/compoisson/compoisson_0.3.tar.gz')

install_url('http://cran.r-project.org/src/contrib/Archive/phylosim/phylosim_3.0.2.tar.gz')

ADD COMMENTlink modified 6 days ago • written 6 days ago by maxime.policarpo130

yea I have done this it worked thanks. I should have came back to add this answer (im terrible at this). Thank you so much for doing that.

ADD REPLYlink written 4 days ago by Elephantdumbo20
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