I tried to use SingleR to identify cell types for clusters. I have the table of results from
I know that I can use:
SingleR(GetAssayData(seurat.object, assay = assay, slot = "data"), clusters = Idents(seurat.object), ref = hpca.se, labels = hpca.se$label.main)
But is there any way I can utilize the markers for each cluster to define cell types using
Thank you for help.