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Question: Embedding Metagenomics Tools onto a Website
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gravatar for stelaanag
8 weeks ago by
stelaanag • 0
Greece
stelaanag • 0 wrote:

Hello, I'm making a website and I want to add a page where there could be a user-friendly interface for people to use different tools that do sequencing, aligning etc (for example bowtie2, samtools etc). I have seen a tutorial going around for Blast but it was only specific towards that so I was wondering whether there's something adjacent for other kinds of bioinformatics tools. Thank you in advance!
sequencing fungi alignment metagenomics bacteria • 123 views
ADD COMMENT • link •
modified 8 weeks ago by Jean-Karim Heriche ♦ 24k • written 8 weeks ago by stelaanag • 0
2

Try galaxy

ADD REPLY • link modified 8 weeks ago • written 8 weeks ago by cpad0112 ♦ 14k
0
gravatar for Jean-Karim Heriche
8 weeks ago by
Jean-Karim Heriche ♦ 24k
EMBL Heidelberg, Germany
Jean-Karim Heriche ♦ 24k wrote:

It depends on how you want to build this. If you're building it from scratch, then search the web for cgi programming with your language of choice. What you've seen for BLAST is probably an example of this that could be adapted to any other tool you care to run. Alternatively, you could set up a Galaxy server.
ADD COMMENT • link written 8 weeks ago by Jean-Karim Heriche ♦ 24k

Hello! Thanks for the suggestions! I have already made a galaxy account so I guess setting up a server would be the next step!

ADD REPLY • link written 8 weeks ago by stelaanag • 0
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