I downloaded TCGA data using R TCGABiolinks framework.
The LUAD clinical dataset has a variable
paper_iCluster.group, I've found this resource TCGA_Marker_Papers, which says that all the variables starting by
paper_ come from PanCancerAtlas publications. I've tracked down the origin of this variable to the following paper LUAD.
For LUSC a similar paper exists LUSC, which also makes reference to the classification of this iCluster.group however I don't have this variable in my lusc clinical dataset.
I wonder if someone who has worked with this datasets already knows if there is a way of getting this classification for the lusc dataset. I also suspect this might be a data inconsistency from downloading the data from TCGABiolinks.
Any help is appreciated,
Thanks in advance