We are trying to write a script which can analyse multiple samples for SnpSift CaseControl. There is "+" symbol in the command to represent the no. of samples. How to define this option of the command in the script. Here is the script, we are trying to run, but it is not working.
for f1 in *vcf do java -jar SnpSift.jar caseControl "$f1+" $f1 > $f1_CC.vcf done
Please help with this.