software or R package to change protein *.msf file to any readable file
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10 months ago
yueli7 ▴ 220

Hello

I have some protein *.msf file. I can not open it.

Which software or R package that can change this kind of *.msf to any readable file?

Thanks in advance for great help!

Best,

Yue

software error • 447 views
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How was this file generated? What does the command file <filename>.msf return? Have you tried head, more and less on the file?

Also, how is the software error tag relevant here?

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Hello RamRS,

Thank you so much for your great help!

I think it is a SQLite database.

Thank you again!

Best,

Yue

-p0xxx:~$ file OstromR_Set7_Enriched.msf 
OstromR_Set7_Enriched.msf: SQLite 3.x database, last written using SQLite version 3007011
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If this is related to your prior question then you need to show output of things @RamRS has asked: change *.msf file into excel file

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From this, it is apparent that the msf file is a database that can be opened in SQLite. OP should be looking for R packages that can read in SQLite DBs, such as RSQLite: https://db.rstudio.com/databases/sqlite/

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Hello RamRS,

Thank you so much for your great help!

Best,

Yue

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