t2g.py tconversion of ranscript to gene name text file is returning empty file
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5 months ago
makwana.kd ▴ 30

Hi , I am trying to build a genome index using a Kallisto to analyze 10x data. I am at the step of making a transcript to gene map. I am using t2g.py utility for the above-mentioned step.

my command is:

./t2g.py < Mus_musculus.GRCm38.96.gtf > transcripts_to_genes.txt

This command is generating an empty output file.

Any help is much appreciated

next-gen RNA-Seq sequencing rna-seq alignment • 162 views
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