how to get chromInfo file

Question

[fuhaolll2]

Hi,i'm using outrigger to detect AS events. It needs hg38.chrominfo.

Table 'HG38.chromInfo' doesn't exist\n"

So, how can i get this file.

[Arup Ghosh]

A similar issue has been discussed in the following thread.

https://github.com/YeoLab/outrigger/issues/89

Download the chromInfo file from the following link.

http://hgdownload.cse.ucsc.edu/goldenpath/hg38/database/chromInfo.txt.gz

[fuhaolll2]

Thanks! I have tried ,but it dosen't work. Did you have used it before , content in chrominfo should be in especial format?

[GenoMax]

I have tried ,but it dosen't work.

What does not work? @Arup linked the file directly above (and the link does work).

[fuhaolll2]

I can download it, but in the tools it doesn't work

[GenoMax]

Did you try renaming the file HG38.chromInfo?

[christoph.schubart]

Hi, did you solve this issue? I get the same problem "Objekt 'chrominfo_grch38' nicht gefunden" using the scarhrd package in R