GO Gene Set Enrichment Analysis for maSigPro output
Entering edit mode
10 months ago

It might sound naive, but is there a way to do GO Gene Set Enrichment Analysis with DEGs obtained from maSigPro using clusterPRofiler? I am not sure how to sort the DEGs I obtained from maSigPro in decreasing order to provide to the gseGO function. Generally one do the sorting of DEGs with logFC if using edgeR or DESeq2, but can anyone suggest how to from output of maSigPro, since the output only gives p-value and r-square only? Can anyone suggest the way out. Thanks.

maSigPro clusterProfiler • 284 views

Login before adding your answer.

Traffic: 1063 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6