Linking SNPs to their summary statistics - if any -
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3.4 years ago
SGMS ▴ 130

Hi everyone,

I have a pool of SNPs I have extracted for a number of gene regions. These are ~3M. I need to find whether these SNPs have accompanied summary statistics (beta/ses). My idea was to find these from GWAS catalog but I end up having only ~2K of them and some actually do not even have betas/ses. I then thought about Neal lab but in order to extract sum stats, you need to go phenotype-by-phenotype to make sense.

Has anyone done something similar?

Thanks a lot

snps statistics gwas • 519 views
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