question: creating metadata files for blobtool
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5 months ago
slin023 • 0

Hello, I am currently using blobtool to filter out contaminated contigs. Right now I am following the tutorial where I have to prepare dataset (https://blobtoolkit.genomehubs.org/blobtools2/blobtools2-tutorials/creating-a-dataset/). To do that, I have to at least have 1. genome assembly .fasta (I already had that) 2. genome assembly metadata .yaml ( optional, but I don't have it). Where can I create assembly metadata .yaml? I used Hicanu assembly to assembly genome (https://canu.readthedocs.io/en/latest/quick-start.html), I have never seen any .yaml output files. Or is it possible to use .fasta to convert into .yaml files? Please let me know, thank you

Assembly • 160 views
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