Hi, I am using Picard to find duplicate reads. My command is:
java -jar build/libs/picard.jar MarkDuplicates \ I=Input.bam \ O=marked_duplicate.bam \ M=marked_dup_metrics.txt
I followed this syntax from here https://broadinstitute.github.io/picard/command-line-overview.html#MarkDuplicates I am getting the error which says that:
picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 0.02 minutes.
But there is nothing in marked_duplicate.bam
I don't know what is th error. It would be helpful if I could get a lead.