I have a MUMmer delta file. What commands do I run to import this file into vg for genome graph construction and indexing?
Always mention what you've tried and where exactly you run into a problem.
I think what he/she mean is whether we can use the output delta file of MUMmer (the whole-genome alignment of several de novo assemblies) like the Cactus for building the pangenome graph? I have the same question since there is hal2vg script in the cactus website while we do not know how to transfer the output of mummer to vg input. Thanks
get the sv from delta and u can set them as input of vg
Care to elaborate with maybe some pseudocode and also fix your answer so it doesn't read like SMS jargon? We're on a professional forum, please write like you'd write on official communication (like a presentation or a document meant for wider consumption).
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