Validation Of Homology Model

Question

[eka0700]

I have done homology modeling of a protein and want to validate it using procheck. but if i do this homology modeling using swiss model , procheck can't open the pdb file. But it gives interactive Ramchandran plot after doing homology modeling using modweb. and i don't know well about the criteria of satisfactory Ramchandran plot. when i can say that this model is good? Hearing your suggestion about this topic will make me grateful. Thanks in advance.

[Zev.Kronenberg]

I am sure there are people here who can. However, without additional information you question is not answerable. Please give more information.

Answer 1

[madkitty]

PLEASE UPDATE YOUR PLOT SO WE CAN HELP YOU OUT WITH THAT :)