Entering edit mode
3.3 years ago
mewgia
•
0
Hello!
I try to install cummerbund. Ubuntu 18.04, R 3.6.3, Bioconductor version 3.10 (BiocManager 1.30.10) using this page https://www.bioconductor.org/packages/3.10/bioc/html/cummeRbund.html for help. But it has errors:
ERROR: configuration failed for package ‘XML’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/XML’
ERROR: dependency ‘XML’ is not available for package ‘biomaRt’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/biomaRt’
ERROR: dependency ‘XML’ is not available for package ‘rtracklayer’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/rtracklayer’
ERROR: dependencies ‘rtracklayer’, ‘biomaRt’ are not available for package ‘GenomicFeatures’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/GenomicFeatures’
ERROR: dependency ‘rtracklayer’ is not available for package ‘BSgenome’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/BSgenome’
ERROR: dependencies ‘rtracklayer’, ‘BSgenome’, ‘GenomicFeatures’ are not available for package ‘VariantAnnotation’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/VariantAnnotation’
ERROR: dependencies ‘GenomicFeatures’, ‘rtracklayer’ are not available for package ‘ensembldb’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/ensembldb’
ERROR: dependencies ‘Hmisc’, ‘GenomicFeatures’, ‘VariantAnnotation’, ‘ensembldb’ are not available for package ‘biovizBase’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/biovizBase’
ERROR: dependencies ‘rtracklayer’, ‘biomaRt’, ‘GenomicFeatures’, ‘BSgenome’, ‘biovizBase’ are not available for package ‘Gviz’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/Gviz’
ERROR: dependencies ‘rtracklayer’, ‘Gviz’ are not available for package ‘cummeRbund’
* removing ‘/home/bobii/R/x86_64-pc-linux-gnu-library/3.6/cummeRbund’
The downloaded source packages are in
‘/tmp/RtmpWkh5H9/downloaded_packages’
What i do wrong and what should i do to install it? thank you for your help.