Subset vcf file by column ID in other file

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3.4 years ago

bio.pelayo • 0

Hi all!

I have a vcf file from exome seq (11GB). I have another file (.txt) with only one column. I want to subset the vcf with the ID that both files have in common.

SNP vcf • 553 views

ADD COMMENT • link updated 3.4 years ago by zx8754 11k • written 3.4 years ago by bio.pelayo • 0

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Entering edit mode

What have you tried? Read the bcftools manual, there is a command for your exact situation in there.

ADD REPLY • link 3.4 years ago by Ram 43k

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