Searching for datasets

Question

[jasper.vanhecke]

Hi all,

I was looking for the best way to check for datasets online.

More specific, I need to check for smartseq-2 datasets that publicly available that are colon-related (doesn't matter if IBD, polyps, healthy or colon cancer). I already checked on the ‘human cell atlas’ of ‘TCGA’ but no datasets are available there.

How do you guys search for datasets with specific methods?

Thanks!

Cheers, Jasper

Answer 1

[ATpoint]

sra-explorer : find SRA and FastQ download URLs in a couple of clicks