Hi everyone! I am searching for a tool to recover ribosomal RNA sequences from a bunch of whole genome assemblies I have (Listeria sp.) for phylogeny purposes. Some important points: I only have the assemblies not the raw data and preferably not online tools as I have around 150 genomes. Until now I have found Anvio-6.2 (anvi-get-sequences-for-hmm-hits) and SortMeRNA, but both are focused on metagenomic reads, not sure if this can affect my results. I appreciate your suggestions.