RNA-Seq analysis with Python
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10 months ago

I will start working in a lab and I will do RNA-Seq data analysis in the lab and I know Python and a little bit (very little) R. Is there any tutorial, video, book, online course or etc to give me an introductory perspective about RNA-Seq analysis in Python? Or is it impossible to do RNA-Seq analysis in Python? :(

Thanks in advance

RNA-Seq tutorial python data analysis • 655 views
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10 months ago

Some of the best tools for RNA-seq analysis are command line programs and R libraries. For alignment there are the command line programs STAR, salmon, or kallisto. For differential expression the most popular software are the R libraries edgeR or DESeq2. Software for QC and intermediate steps come in all flavors including command line, R, and python. Because of the above considerations it would be difficult to do everything contained within a single language or framework.

Bioconductor has a great vignette on RNA-seq you can follow to learn more.

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Thank you so I need to start improving myself in R.

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You might also find this post helpful on the way. (And probably this post too.)

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