Question: Downloading all-against-all precomputed for any number of species returns 504 Gateway Time-out
1
gravatar for m3hdad
6 weeks ago by
m3hdad10
Italy
m3hdad10 wrote:

Orthology MAtrix algorithm is a promising approach in my current project. I would like to download all-against-all pre-computed alignments for a clade and use the standalone tool on my custom genome.

Navigating to https://omabrowser.org/oma/export/ and selecting any number of species (less than 50) returns "504 Gateway Time-out" when submitting request.

I have been trying it for a week. No luck.

error oma • 116 views
ADD COMMENTlink written 6 weeks ago by m3hdad10
1

Hi @m3hdad,

thanks for letting us know. We're experiencing some problems with our backend cluster. I'll let you know here once it is fixed.

Best wishes Adrian

ADD REPLYlink written 6 weeks ago by adrian.altenhoff770

Hi m3hdad,

the problem seems to be solved. I could now export again a small test set. Please let us know in case you still experience some problems. Sorry for the inconvenience this has caused.

Best wishes Adrian

ADD REPLYlink written 6 weeks ago by adrian.altenhoff770

Hey Adrian,

I confirm the issue is solved.

Thanks for your prompt respond.

ADD REPLYlink written 6 weeks ago by m3hdad10

glad to hear, you're welcome! Cheers

ADD REPLYlink written 6 weeks ago by adrian.altenhoff770

Adrian I think your email server is down (contact@omabrowser.org) I cannot get any through.

I was wondering if it is possible to download >50 mappings, I would like to export and download all-against-all for viridiplantae. It is instructed to contact administrators for such request.

ADD REPLYlink written 6 weeks ago by m3hdad10

Hi, sorry just saw your message now. I regularly receive email to contact@omabrowser.org, I think it is working. you can also send a message to me on adrian.altenhoff@inf.ethz.ch.

The reason for the limit is mostly storage requirements. So think I could also provide you with a Viridiplantae export version.

ADD REPLYlink written 5 weeks ago by adrian.altenhoff770
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