I have many bam files (containing rna-seq data), and i need to obtain the total coverage in each file. I tried to use "samtool depth", but since the output is so huge - and i need to sum up all the values there, i was wondering of there's a simpler/faster way to get this value.
Question: Obtaining coverage for rna-seq data
6 weeks ago by
rotemkat • 10
rotemkat • 10 wrote:
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