Entering edit mode
2.5 years ago
User000 ▴ 660
I am trying to run Platypus variant caller but it continues to give me the following error:
print "\n\n%s command is not yet implemented\n\n" %(x) ^ SyntaxError: invalid syntax
Could you, please, suggest is there a way to solve this?
Hi, Seems like you are passing an argument to Platypus which it is unable to execute/ implement. If you can post the run set-up, then a better guess can be taken. The error message alone is not enough.
Thanks for the reply. This is the Platypus.py code. Could it be useful?
I am running it as python Platypus.py
Hi, I am sorry, no clue with the setup you are using for Platypus. I had followed the instructions here and was able to run it successfully (ver. 0.8.1).
After installation as specified, I used this setup -
The capture regions if provided, are to be in this format -
btw, the python code snippet you posted above, seems to be the
src/pythondirectory of the
Platypus-master.zipfile downloadable from the Github repo. If so, that is not the way to run Platypus. Please follow the instructions on the Github page. Btw, I realise that now this is available via Conda, which would be much easier way to go by.
Hi Amitm, thanks! I was albe to run it with Python2 as well now. It is not working eith python 3 and give me the error above.... also i could be able to download with conda but only with python2...