versioned transcripts with SnpEff GRCh37
0
0
Entering edit mode
6 months ago
nhaus ▴ 40

Hello, i have a vcf file which was generated with the GRCh37 reference genome. For downstream processing I have to annotated it with SnpEff, which works perfectly fine.

The problem is that I need versioned transcripts, and with this command java -Xmx8g -jarsnpEff.jar GRCh37.75 test.vcf > test.ann.vcf, I unfortunately only get the "normal" transcript ID (e.g.ENST00000474887).

So my question is, if there is an option to get versioned transcripts (e.g. ENST00000474887.5) with SnpEff. For vep for example there is the --transcript_version option which does what I want.

Cheers!

SnpEff annotation • 185 views
ADD COMMENT

Login before adding your answer.

Traffic: 1231 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6