Off topic:R package for differentially expressed genes on cpm normalized data
0
1
Entering edit mode
3.3 years ago
hiam ▴ 10

Hi. I want to find differentially expressed genes in my RNA-seq data, but don't know which package is appropriate. I can not use DEseq2 because my data are CPM(count per million) normalized and log1p (natural log) transformed. while DEseq2 need row count data. Any useful suggestions would be appreciated.

rna-seq R DEG differencially expressed gene cpm • 375 views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 1830 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6