GLIPH version 2 question
0
0
Entering edit mode
9 months ago
roberts ▴ 40

Hello I have TCR libraries from 10X prep. I am trying to compare the VDJ data to see if there is any similar/known sequences. I am trying to run it through GLIPH but I keep getting an error. The site says that

The format of TCR input file is tab-delimited, expecting the following columns in this order: CDR3b Vb Jb CDR3a Subject:condition Frequency

My input has CDR3b, Vb, Jb, CDR3a but I cant firgure out what Subject:condition means. Does anyone know/has used GLIPH or a similar program before and can help? Thanks!

RNA-Seq R GLIPH TCR 10X • 248 views
ADD COMMENT

Login before adding your answer.

Traffic: 2431 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6