GLIPH version 2 question
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9 months ago
roberts ▴ 40

Hello I have TCR libraries from 10X prep. I am trying to compare the VDJ data to see if there is any similar/known sequences. I am trying to run it through GLIPH but I keep getting an error. The site says that

The format of TCR input file is tab-delimited, expecting the following columns in this order: CDR3b Vb Jb CDR3a Subject:condition Frequency

My input has CDR3b, Vb, Jb, CDR3a but I cant firgure out what Subject:condition means. Does anyone know/has used GLIPH or a similar program before and can help? Thanks!

RNA-Seq R GLIPH TCR 10X • 248 views

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