Question: How To Convert Wig File Format Into Fasta Format ?
0
gravatar for monukmr98
7.8 years ago by
monukmr9860
United States
monukmr9860 wrote:

Hi all I have a WIG file format file for some mutation and I want to map these mutations on the chromosome/gene. How can I do that ? Thanks

wiggle format conversion • 3.8k views
ADD COMMENTlink modified 7.8 years ago by Vikas Bansal2.4k • written 7.8 years ago by monukmr9860
0
gravatar for Vikas Bansal
7.8 years ago by
Vikas Bansal2.4k
Berlin, Germany
Vikas Bansal2.4k wrote:

Hi! Have look at this post. You can convert your wig to bed. Then download refseq genes from UCSC or Ensembl in bed format. Then use bedtools intersect.

ADD COMMENTlink written 7.8 years ago by Vikas Bansal2.4k

Thanks for your help. I have converted wig file into bed file and also downloaded bedtools. But have been unable to get bed format for human genes from either of the source you mentioned ..! In ensemble, link for fasta format is given. Thanks

ADD REPLYlink written 7.8 years ago by monukmr9860

If you will go to UCSC tables, select your genome of interest, assembly and then gene and prediction (group), refseq gene track and table and download it as a bed format.

ADD REPLYlink written 7.8 years ago by Vikas Bansal2.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 969 users visited in the last hour