Question: Structural variations intersection
gravatar for tomilova.ekaterina.rp
9 weeks ago by
tomilova.ekaterina.rp0 wrote:

I intersect the structural variations of the vcf-files using Survivor. However, I don't know what principle the intersection is based on. I understand all the settings of the program, but I cannot find any reasonable confirmation in the articles that exactly is considered an intersection. Is there a gold standard for crossing? What percentage of overlap should structural variations have?

snp next-gen • 173 views
ADD COMMENTlink modified 12 days ago by Biostar ♦♦ 20 • written 9 weeks ago by tomilova.ekaterina.rp0

Can you post your command? In Survivor merge there is a distance param, based on which two SVs could be counted as one.

ADD REPLYlink written 12 days ago by Medhat8.9k
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