Entering edit mode
3.2 years ago
nordstedt.1
•
0
Hello,
I used plasmidSPAdes for detection of plasmids in my Illumina paired end whole-genome sequence reads. Does anyone have experience interpreting the output data? I got six different nodes of varying length in the 'scaffolds.fasta' output file. What is the best way to determine if any of these sequences are for plasmids in my whole-genome sequence data?
Thank you!