Hi:
I put a fasta file for MEME like this:
meme input.fasta -mod anr -oc MEME_no_control_motif10 -rna -nmotifs 10 -minw 6 -maxw 10 > log4 2> error4
cat error4
Dataset too large (> 100000). Rerun with larger -maxsize.
The fasta contains about 318 sequences:
wc -l input.fasta
636 input.fasta
(636=318*2 because the fasta file also contains coordinates)
Is this normal for MEME, the manual said better no more than 500 primary sequences. What should I to make it run?
Thanks,
Have you tried what the program is telling you to do?
Thanks for reply. I tried it by using maxsize 0. still get the same results, I just tried to use the first 100 line to run the code, it worked well. I guess my sequence plus the number of sequences exceed the limit of meme; then i tried too add a number of -maxsize 200000, it starts running.